It would be useful to be able to reconcile pending payments, not just cleared ones. My bank is Starling and only once a payment has cleared, it arrives in freeagent. But this can take days and the delay means extra work having to go hunting for the reciept.
Hi Sam 
Jamie from FreeAgent here, thank you for reaching out!
I think this feature request may be best raised with our Support team. You can find the details to get in touch with them here. I hope this helps. 
Kind regards,
Jamie